STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Isop_0203Protein of unknown function DUF1080; COGs: COG4099 peptidase; InterPro IPR001330: IPR010496: IPR003140; KEGG: plm:Plim_2385 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; Prenyltransferase/squalene oxidase; phospholipase/Carboxylesterase; SPTR: Putative uncharacterized protein; PFAM: Prenyltransferase and squalene oxidase repeat; Domain of Unknown Function (DUF1080); Putative esterase. (751 aa)    
Predicted Functional Partners:
Isop_1348
Heme-binding protein; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterProIPR021133: IPR009056: IPR013427: IPR004155: IPR 014795; KEGG: plm:Plim_1957 heme-binding protein; PFAM: protein of unknown function DUF1778; PBS lyase HEAT domain protein repeat-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: heme-binding protein; PFAM: Cytochrome c; HEAT repeat; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
 
     0.521
Isop_3280
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR017909: IPR000683; KEGG: zpr:ZPR_3683 putative dehydrogenase and relate protein; PFAM: oxidoreductase domain protein; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
  
     0.508
Isop_0204
KEGG: mac:MA3428 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.499
Isop_2736
KEGG: mxa:MXAN_5625 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.478
Isop_2275
InterPro IPR001623; KEGG: tcu:Tcur_1396 fibronectin type III domain protein; PFAM: heat shock protein DnaJ domain protein; SPTR: Fibronectin type III domain protein.
  
     0.467
Isop_2653
Hypothetical protein; COGs: COG3387 Glucoamylase and related glycosyl hydrolase; KEGG: tjr:TherJR_2725 glycoside hydrolase 15-related protein; SPTR: Glycoside hydrolase 15-related protein.
 
     0.465
Isop_0179
KEGG: eba:ebA4323 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.464
Isop_3013
KEGG: cya:CYA_2879 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.460
Isop_1520
InterPro IPR019734: IPR013026: IPR001440; KEGG: dak:DaAHT2_1784 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein.
  
     0.457
Isop_1111
Tyrosine phosphatase; InterPro IPR000387: IPR004861; KEGG: geo:Geob_0068 protein tyrosine/serine phosphatase; PFAM: tyrosine phosphatase; SPTR: Protein tyrosine/serine phosphatase; PFAM: Tyrosine phosphatase family.
  
     0.449
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.