Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Isop_0232WD40-like beta Propeller containing protein; COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: psl:Psta_4140 WD40 domain protein beta propeller; PFAM: WD40-like beta Propeller containing protein; SPTR: WD40 domain protein beta Propeller; PFAM: WD40-like Beta Propeller Repeat. (365 aa)    
Predicted Functional Partners:
Isop_2303
Peptidase M28; COGs: COG2234 aminopeptidase; InterPro IPR001478: IPR017441: IPR003137: IPR007484; KEGG: psl:Psta_3192 peptidase M28; PFAM: peptidase M28; protease-associated PA domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: Probable aminopeptidase; PFAM: PA domain; PDZ domain (Also known as DHR or GLGF); Peptidase family M28.
     0.958
Isop_1644
PDZ/DHR/GLGF domain protein; InterPro IPR001478; KEGG: rmr:Rmar_0910 glycosyl hydrolase BNR repeat-containing protein; PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: Glycosyl hydrolase BNR repeat-containing protein; PFAM: BNR/Asp-box repeat.
 
 
 
 0.641
Isop_1883
Peptidase M28; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: rbi:RB2501_14084 probable aminopeptidase; PFAM: peptidase M28; SPTR: Peptidase M28; PFAM: Peptidase family M28.
     0.458
Isop_1210
KEGG: aba:Acid345_0515 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: BNR/Asp-box repeat.
  
     0.452
Isop_0231
ATP:cob(I)alamin adenosyltransferase; COGs: COG2096 conserved hypothetical protein; InterPro IPR017858: IPR002779; KEGG: rmr:Rmar_1592 ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: ATP/cobalamin adenosyltransferase; TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase.
       0.437
Isop_0972
Peptidase M28; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: nde:NIDE3566 putative peptidase; PFAM: peptidase M28; SPTR: Aminopeptidase; PFAM: Peptidase family M28.
     0.436
Isop_0233
KEGG: plm:Plim_3923 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF664).
       0.421
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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