STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0299Protein of unknown function DUF486; COGs: COG3169 conserved hypothetical protein; InterPro IPR007437; KEGG: dia:Dtpsy_2708 protein of unknown function DUF486; PFAM: protein of unknown function DUF486; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF486. (114 aa)    
Predicted Functional Partners:
Isop_0300
Esterase; COGs: COG2382 Enterochelin esterase; InterPro IPR004193: IPR000801; KEGG: sli:Slin_1254 putative esterase; PFAM: esterase; glycoside hydrolase family 13 domain protein; SPTR: Putative esterase; PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Putative esterase.
       0.447
Isop_0298
Hypothetical protein; InterPro IPR018247; KEGG: rbi:RB2501_05365 probable large multifunctional protein-putative glycosyl hydrolase; SPTR: Probable large multifunctional protein-putative glycosyl hydrolase.
       0.423
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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