STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0312Protein of unknown function DUF1549; InterPro IPR011444; KEGG: rba:RB12155 signal peptide; PFAM: protein of unknown function DUF1549; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553). (1101 aa)    
Predicted Functional Partners:
Isop_0311
Protein of unknown function DUF1501; InterPro IPR010869: IPR006311: IPR017909; KEGG: rba:RB12159 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1501).
 
     0.886
Isop_3133
NHL repeat containing protein; InterPro IPR006311: IPR017909: IPR001258; KEGG: psl:Psta_2952 NHL repeat containing protein; PFAM: NHL repeat containing protein; SPTR: Twin-arginine translocation pathway signal; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
  
   0.805
Isop_0783
COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR017896; KEGG: ote:Oter_3934 Fe-S-cluster-containing hydrogenase components 1-like protein; SPTR: Molybdopterin oxidoreductase, iron-sulfur binding subunit.
  
 
 0.803
Isop_1158
Protein of unknown function DUF1501; InterPro IPR017909: IPR006311: IPR010869; KEGG: psl:Psta_0183 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
  
     0.774
Isop_1218
InterPro IPR017909: IPR010869; KEGG: psl:Psta_4533 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1501).
 
     0.774
Isop_1295
Protein of unknown function DUF1501; InterPro IPR017909: IPR006311: IPR010869; KEGG: rba:RB12732 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1501).
  
     0.774
Isop_1704
InterPro IPR017909: IPR010869; KEGG: psl:Psta_4556 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1501).
  
     0.774
Isop_1945
Protein of unknown function DUF1501; InterPro IPR010869: IPR006311: IPR006186; KEGG: psl:Psta_3350 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1501).
  
     0.774
Isop_2037
Protein of unknown function DUF1501; InterPro IPR010869: IPR006311: IPR017909; KEGG: rba:RB546 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1501).
  
     0.774
Isop_2382
Protein of unknown function DUF1501; InterPro IPR006311: IPR010869: IPR017909; KEGG: rba:RB2170 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1501).
  
     0.774
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.