STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0347Permease YjgP/YjgQ family protein; COGs: COG0795 permease; InterPro IPR005495; KEGG: psl:Psta_2358 permease YjgP/YjgQ family protein; PFAM: permease YjgP/YjgQ family protein; SPTR: Permease YjgP/YjgQ family protein; PFAM: Predicted permease YjgP/YjgQ family. (392 aa)    
Predicted Functional Partners:
Isop_0734
ABC transporter related protein; COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003439: IPR003593: IPR017871; KEGG: psl:Psta_0620 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter.
   
 0.957
Isop_0346
Permease YjgP/YjgQ family protein; COGs: COG0795 permease; InterPro IPR005495; KEGG: plm:Plim_2512 permease YjgP/YjgQ family protein; PFAM: permease YjgP/YjgQ family protein; SPTR: Permease YjgP/YjgQ family protein; PFAM: Predicted permease YjgP/YjgQ family.
 
  
  0.933
Isop_2313
PEGA domain protein; InterPro IPR013229; KEGG: plm:Plim_2448 PEGA domain protein; PFAM: PEGA domain protein; SPTR: PEGA domain protein; PFAM: PEGA domain.
  
     0.714
Isop_1114
Type II and III secretion system protein; COGs: COG1450 Type II secretory pathway component PulD; InterPro IPR019734: IPR001440: IPR004846; KEGG: plm:Plim_0641 hypothetical protein; PFAM: type II and III secretion system protein; Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial type II and III secretion system protein.
  
     0.713
Isop_1769
KEGG: rba:RB11569 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.678
Isop_2377
KEGG: plm:Plim_0704 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.646
Isop_3562
KEGG: plm:Plim_0727 hypothetical protein; SPTR: Putative uncharacterized protein.
  
   
 0.643
Isop_2518
Peptidase S24 and S26 domain protein; InterPro IPR006650: IPR019758: IPR000223; KEGG: plm:Plim_1125 peptidase S24 and S26 domain protein; SPTR: Peptidase S24 and S26 domain protein.
 
     0.630
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.611
Isop_0816
KEGG: psl:Psta_3746 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.609
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.