STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0360COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: plm:Plim_1158 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2. (385 aa)    
Predicted Functional Partners:
Isop_0361
KEGG: nda:Ndas_3773 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104).
  
    0.708
Isop_1504
Glycosyl transferase family 39; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: psl:Psta_3676 glycosyl transferase family 39; PFAM: glycosyl transferase family 39; SPTR: Glycosyl transferase family 39; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
    0.682
Isop_0359
KEGG: plm:Plim_0766 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.575
Isop_0468
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR001173: IPR013216; KEGG: plm:Plim_3541 glycosyl transferase family 2; PFAM: Methyltransferase type 11; glycosyl transferase family 2; SPTR: Glycosyl transferase, family 2; PFAM: Methyltransferase domain; Glycosyl transferase family 2.
  
    0.551
Isop_2484
Dolichyl-phosphate beta-D-mannosyltransferase; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: psl:Psta_2011 dolichyl-phosphate beta-D-mannosyltransferase; PFAM: glycosyl transferase family 2; PRIAM: Dolichyl-phosphate beta-D-mannosyltransferase; SPTR: Dolichyl-phosphate beta-D-mannosyltransferase; PFAM: Glycosyl transferase family 2.
  
     0.513
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.