STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Isop_0367NAD-dependent dehydrogenase subunit; COGs: COG4237 Hydrogenase 4 membrane component (E); KEGG: dat:HRM2_38990 HyfE; SPTR: NAD-dependent dehydrogenase subunit. (216 aa)    
Predicted Functional Partners:
Isop_0365
NADH dehydrogenase (ubiquinone) 30 kDa subunit; COGs: COG3261 Ni Fe-hydrogenase III large subunit; InterPro IPR001268; KEGG: geo:Geob_1700 NADH dehydrogenase (ubiquinone) 30 kDa subunit; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; SPTR: NADH dehydrogenase (Ubiquinone) 30 kDa subunit; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Respiratory-chain NADH dehydrogenase, 49 Kd subunit.
 
  
 0.997
Isop_0364
NADH ubiquinone oxidoreductase 20 kDa subunit; COGs: COG3260 Ni Fe-hydrogenase III small subunit; InterPro IPR006137: IPR017900: IPR017896; KEGG: geo:Geob_1699 NADH ubiquinone oxidoreductase 20 kDa subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; SPTR: NADH ubiquinone oxidoreductase 20 kDa subunit; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit.
 
  
 0.988
Isop_0368
COGs: COG0650 Formate hydrogenlyase subunit 4; KEGG: gme:Gmet_0374 respiratory-chain NADH dehydrogenase subunit 1; SPTR: Respiratory-chain NADH dehydrogenase, subunit 1; PFAM: NADH dehydrogenase.
 
  
 0.975
Isop_0366
NADH/Ubiquinone/plastoquinone (complex I); COGs: COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter MnhD subunit; InterPro IPR001750; KEGG: dat:HRM2_39000 HyfF; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: HyfF; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains.
 
  
 0.965
Isop_0369
NADH/Ubiquinone/plastoquinone (complex I); COGs: COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter MnhD subunit; InterPro IPR001750: IPR003918; KEGG: dat:HRM2_38970 HyfB; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: HyfB; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains.
 
  
 0.965
Isop_0370
PTS IIA-like nitrogen-regulatory protein PtsN; COGs: COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR000551: IPR010093: IPR002178; KEGG: gur:Gura_0893 putative PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: regulatory protein MerR; SPTR: Putative PTS IIA-like nitrogen-regulatory protein PtsN; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; TIGRFAM: DNA binding domain, excisionase family.
 
     0.880
Isop_0363
Sulphate transporter; COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547; KEGG: plm:Plim_3748 sulphate transporter; PFAM: sulphate transporter; SPTR: Sulphate transporter; PFAM: Sulfate transporter family.
       0.536
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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