STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0399Heavy metal translocating P-type ATPase; COGs: COG2217 Cation transport ATPase; InterProIPR008250: IPR005834: IPR018303: IPR006416: IPR 001757; KEGG: caa:Caka_0015 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporti [...] (970 aa)    
Predicted Functional Partners:
Isop_0397
COGs: COG2993 Cbb3-type cytochrome oxidase cytochrome c subunit; InterPro IPR003468: IPR009056; KEGG: sru:SRU_0323 cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; SPTR: Cytochrome c oxidase mono-heme subunit/FixO; PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II.
 
   
 0.616
Isop_0396
Cytochrome-c oxidase; COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR000883; KEGG: srm:SRM_00402 cytochrome c oxidase subunit 1; PFAM: cytochrome c oxidase subunit I; PRIAM: Cytochrome-c oxidase; SPTR: Putative cytochrome-c oxidase; PFAM: Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I.
 
   
 0.611
Isop_0394
Hypothetical protein; KEGG: dya:Dyak_GE20054 GE20054 gene product from transcript GE20054-RA; SPTR: GE20054.
       0.438
Isop_0395
Hypothetical protein; KEGG: srm:SRM_00401 conserved hypothetical protein, secreted; SPTR: Putative uncharacterized protein; PFAM: Cytochrome oxidase maturation protein cbb3-type.
       0.438
Isop_0398
Cytochrome c class I; InterPro IPR003088: IPR008168: IPR009056; KEGG: caa:Caka_0027 cytochrome c class I; PFAM: cytochrome c class I; SPTR: Cytochrome c class I; PFAM: Cytochrome c.
       0.438
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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