STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0406KEGG: dhd:Dhaf_1705 hypothetical protein; SPTR: Putative uncharacterized protein. (442 aa)    
Predicted Functional Partners:
Isop_0402
InterPro IPR003735; KEGG: ele:Elen_1552 protein of unknown function DUF156; PFAM: protein of unknown function DUF156; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised BCR, COG1937.
       0.773
Isop_0403
Binding-protein-dependent transport systems inner membrane component; COGs: COG4662 ABC-type tungstate transport system periplasmic component; InterPro IPR000515; KEGG: sti:Sthe_3396 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
       0.773
Isop_0404
Phosphate ABC transporter ATP-binding protein, PhoT family; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003439: IPR003593: IPR017871; KEGG: sti:Sthe_3397 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter.
       0.773
Isop_0405
COGs: COG2998 ABC-type tungstate transport system permease component; KEGG: pth:PTH_0602 ABC-type tungstate transport system, permease component; SPTR: ABC-type tungstate transport system, permease component.
       0.773
Isop_0407
InterPro IPR001048; KEGG: swo:Swol_2454 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; SPTR: Aspartate/glutamate/uridylate kinase; PFAM: Amino acid kinase family.
       0.773
Isop_0408
COGs: COG0528 Uridylate kinase; InterPro IPR001048; KEGG: swo:Swol_2454 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; SPTR: Uridylate kinase; PFAM: Amino acid kinase family.
       0.773
Isop_0401
Radical SAM domain protein; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR013704: IPR007197: IPR006638: IPR020612; KEGG: psl:Psta_1639 radical SAM domain protein; PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Domain of unknown function (DUF3362); Radical SAM superfamily; Radical SAM N-terminal.
       0.400
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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