STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Isop_0408COGs: COG0528 Uridylate kinase; InterPro IPR001048; KEGG: swo:Swol_2454 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; SPTR: Uridylate kinase; PFAM: Amino acid kinase family. (276 aa)    
Predicted Functional Partners:
Isop_0407
InterPro IPR001048; KEGG: swo:Swol_2454 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; SPTR: Aspartate/glutamate/uridylate kinase; PFAM: Amino acid kinase family.
 
    
0.784
Isop_0402
InterPro IPR003735; KEGG: ele:Elen_1552 protein of unknown function DUF156; PFAM: protein of unknown function DUF156; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised BCR, COG1937.
       0.779
Isop_0403
Binding-protein-dependent transport systems inner membrane component; COGs: COG4662 ABC-type tungstate transport system periplasmic component; InterPro IPR000515; KEGG: sti:Sthe_3396 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
       0.773
Isop_0404
Phosphate ABC transporter ATP-binding protein, PhoT family; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003439: IPR003593: IPR017871; KEGG: sti:Sthe_3397 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter.
       0.773
Isop_0405
COGs: COG2998 ABC-type tungstate transport system permease component; KEGG: pth:PTH_0602 ABC-type tungstate transport system, permease component; SPTR: ABC-type tungstate transport system, permease component.
       0.773
Isop_0406
KEGG: dhd:Dhaf_1705 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
  
  
 0.761
tsf
Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
  
 0.746
rpsB
COGs: COG0052 Ribosomal protein S2; InterPro IPR001865: IPR018130: IPR005706; KEGG: psl:Psta_0952 ribosomal protein S2; PFAM: ribosomal protein S2; SPTR: Ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; Belongs to the universal ribosomal protein uS2 family.
  
  
 0.741
Isop_1215
COGs: COG0035 Uracil phosphoribosyltransferase; InterPro IPR005765: IPR000836; KEGG: ttr:Tter_1755 uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: Uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase; Belongs to the UPRTase family.
   
 
 0.728
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.