STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0415Protein of unknown function DUF1355; InterPro IPR010768: IPR002035; KEGG: plm:Plim_2313 hypothetical protein; PFAM: protein of unknown function DUF1355; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1355). (783 aa)    
Predicted Functional Partners:
Isop_0414
InterPro IPR011933; KEGG: psl:Psta_0478 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain.
 
     0.953
Isop_0413
Protein of unknown function DUF58; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: psl:Psta_1558 von Willebrand factor type A; PFAM: protein of unknown function DUF58; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF58.
 
     0.817
Isop_3542
Conserved hypothetical protein; InterPro IPR011933: IPR002035; KEGG: psl:Psta_2914 hypothetical protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: Putative uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: von Willebrand factor type A domain; Aerotolerance regulator N-terminal; CARDB; TIGRFAM: N-terminal double-transmembrane domain.
 
     0.773
Isop_3540
Hypothetical protein; KEGG: srm:SRM_02025 conserved hypothetical protein, membrane; SPTR: Putative uncharacterized protein.
  
    0.762
Isop_3170
KEGG: plm:Plim_2314 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.742
Isop_0409
Prenyltransferase/squalene oxidase; InterPro IPR001330; KEGG: plm:Plim_0306 A-macroglobulin complement component; PFAM: Prenyltransferase/squalene oxidase; SPTR: A-macroglobulin complement component.
 
     0.714
Isop_3543
Protein of unknown function DUF58; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881: IPR002035; KEGG: psl:Psta_2915 protein of unknown function DUF58; PFAM: protein of unknown function DUF58; SMART: von Willebrand factor type A; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF58.
 
     0.708
Isop_2366
InterPro IPR011031; KEGG: psl:Psta_4660 5'-nucleotidase/2' 3'-cyclic phosphodiesterase esterase-like protein; SPTR: 5'-nucleotidase/2' 3'-cyclic phosphodiesterase esterase-like protein.
  
     0.641
rpsU
SSU ribosomal protein S21P; InterPro IPR001911; KEGG: psl:Psta_3640 ribosomal protein S21; PFAM: ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.612
Isop_1439
Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR019734: IPR013026: IPR001440: IPR001917; KEGG: plm:Plim_3586 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Putative uncharacterized protein; PFAM: Tetratricopeptide repeat.
  
     0.608
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.