STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0432Membrane-bound dehydrogenase domain protein; InterPro IPR013428: IPR013427: IPR009056; KEGG: psl:Psta_1994 membrane-bound dehydrogenase domain protein; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Cytochrome c; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type. (1063 aa)    
Predicted Functional Partners:
Isop_2747
Esterase; KEGG: psl:Psta_2350 esterase; SPTR: Putative uncharacterized protein.
 
     0.774
Isop_0918
KEGG: plm:Plim_1580 large, multifunctional secreted protein; SPTR: Large, multifunctional secreted protein.
  
     0.772
Isop_0917
PA14 domain protein; InterPro IPR011658: IPR009056: IPR011031: IPR017937; KEGG: psl:Psta_3883 PA14 domain protein; SMART: PA14 domain protein; SPTR: PA14 domain protein; PFAM: PA14 domain.
  
     0.756
Isop_3216
InterPro IPR010496; KEGG: psl:Psta_1370 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: Putative secreted glycosyl hydrolase; PFAM: Domain of Unknown Function (DUF1080).
  
     0.755
Isop_0374
FG-GAP repeat protein; InterPro IPR013517; KEGG: psl:Psta_0040 FG-GAP repeat protein; PFAM: FG-GAP repeat protein; SPTR: FG-GAP repeat protein; PFAM: FG-GAP repeat.
  
     0.726
Isop_2519
KEGG: rbi:RB2501_02765 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Trehalose utilisation.
  
     0.691
Isop_2287
Hypothetical protein; InterPro IPR006311; KEGG: rba:RB2096 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3500); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
  
     0.686
Isop_0485
Hypothetical protein; KEGG: sus:Acid_1892 isochorismatase hydrolase; SPTR: Isochorismatase hydrolase; PFAM: Isochorismatase family; Trehalose utilisation.
 
     0.680
Isop_2907
InterPro IPR011701; KEGG: psl:Psta_3978 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily.
  
     0.665
Isop_1140
KEGG: scb:SCAB_17871 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.613
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.