STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0455KEGG: cat:CA2559_07901 hypothetical protein; SPTR: Putative uncharacterized protein. (180 aa)    
Predicted Functional Partners:
Isop_3202
Hypothetical protein; KEGG: ttu:TERTU_3103 putative type I phosphodiesterase/nucleotide pyrophosphatase; SPTR: Putative type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase.
  
     0.643
Isop_2646
Dual specificity protein phosphatase; InterPro IPR000387: IPR000340; KEGG: olu:OSTLU_7942 predicted protein; PFAM: Dual specificity protein phosphatase; SPTR: Predicted protein; PFAM: Dual specificity phosphatase, catalytic domain.
  
     0.628
Isop_0301
Hypothetical protein; KEGG: psl:Psta_3458 methyltransferase type 11; SPTR: Methyltransferase type 11; PFAM: DsrE/DsrF-like family.
  
     0.557
Isop_0454
KEGG: ptr:749912 hypothetical protein LOC749912; SPTR: Copper-exporting ATPase.
       0.551
Isop_3119
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: sti:Sthe_0853 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: Methyltransferase domain.
  
     0.546
Isop_0601
KEGG: sus:Acid_4318 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.516
Isop_1138
GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: rer:RER_23190 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
  
     0.477
Isop_2419
YD repeat protein; COGs: COG3209 Rhs family protein; InterPro IPR003587: IPR006530: IPR006141; KEGG: plm:Plim_1036 AmoP; PFAM: YD repeat-containing protein; SMART: Hedgehog/intein hint domain protein; SPTR: AmoP; TIGRFAM: YD repeat protein; PFAM: RHS Repeat; Protein of unknown function (DUF1557); TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies).
  
     0.449
Isop_1805
Proprotein convertase P; COGs: COG4935 Regulatory P domain of the subtilisin-like proprotein convertase and other protease; InterPro IPR018247: IPR002884; KEGG: scl:sce1039 hypothetical protein; PFAM: Proprotein convertase P; SPTR: Serine protease, subtilase family protein; PFAM: Proprotein convertase P-domain.
  
     0.431
Isop_1833
CRISPR-associated protein, GSU0054; InterPro IPR019089; KEGG: hoh:Hoch_4849 hypothetical protein; PFAM: CRISPR-associated protein, GSU0054; SPTR: Putative uncharacterized protein; PFAM: CRISPR-associated protein, GSU0054 family (Cas_GSU0054); TIGRFAM: CRISPR-associated protein, GSU0054 family.
  
     0.409
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.