STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0465Hypothetical protein; KEGG: rba:RB13032 putative permease; SPTR: Putative uncharacterized protein; PFAM: Predicted permease. (530 aa)    
Predicted Functional Partners:
Isop_0848
InterPro IPR003825; KEGG: plm:Plim_1277 colicin V production protein; PFAM: Colicin V production protein; SPTR: Colicin V production protein; PFAM: Colicin V production protein.
  
     0.769
Isop_2515
Hypothetical protein; KEGG: hsa:4583 mucin 2, oligomeric mucus/gel-forming; SPTR: Mucin-2.
  
     0.769
Isop_3694
KEGG: cts:Ctha_0316 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.766
Isop_3405
KEGG: rba:RB10483 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3467).
  
     0.763
Isop_3179
Hypothetical protein; KEGG: rba:RB850 signal peptide; SPTR: Putative uncharacterized protein.
  
     0.761
Isop_0071
KEGG: psl:Psta_1977 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.758
Isop_0849
KEGG: psl:Psta_2453 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.748
Isop_1114
Type II and III secretion system protein; COGs: COG1450 Type II secretory pathway component PulD; InterPro IPR019734: IPR001440: IPR004846; KEGG: plm:Plim_0641 hypothetical protein; PFAM: type II and III secretion system protein; Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial type II and III secretion system protein.
 
     0.739
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.736
Isop_1549
KEGG: psl:Psta_1016 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.725
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.