STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Isop_0489Rieske (2Fe-2S) iron-sulfur domain protein; COGs: COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenase large terminal subunit; InterPro IPR017941: IPR001663; KEGG: chl:Chy400_2532 Rieske (2Fe-2S) domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Rieske (2Fe-2S) domain protein; PFAM: Rieske [2Fe-2S] domain. (373 aa)    
Predicted Functional Partners:
Isop_1416
COGs: COG3670 Lignostilbene-alpha beta-dioxygenase; InterPro IPR006311: IPR004294; KEGG: cyt:cce_2215 retinal pigment epithelial membrane protein; PFAM: Carotenoid oxygenase; PRIAM: 9-cis-epoxycarotenoid dioxygenase; SPTR: Putative uncharacterized protein; PFAM: Retinal pigment epithelial membrane protein.
  
   
 0.536
Isop_0488
Hypothetical protein; KEGG: cai:Caci_6850 type IV secretory pathway VirD4 protein-like protein; SPTR: Type IV secretory pathway VirD4 protein-like protein.
       0.504
Isop_2003
KR domain protein; COGs: COG3321 Polyketide synthase modules and related protein; InterProIPR014031: IPR014043: IPR006163: IPR013968: IPR 009081; KEGG: glo:Glov_2267 polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: KR domain protein; Beta-ketoacyl synthase; Acyl transferase; phosphopantetheine-binding; SPTR: Polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: acyl carrier protein.
     
 0.474
Isop_2533
Intradiol ring-cleavage dioxygenase; COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR017909: IPR000627: IPR006311; KEGG: psl:Psta_3106 intradiol ring-cleavage dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; SPTR: Intradiol ring-cleavage dioxygenase; PFAM: Dioxygenase.
 
  
 0.456
Isop_1054
COGs: COG3836 2 4-dihydroxyhept-2-ene-1 7-dioic acid aldolase; InterPro IPR005000; KEGG: plm:Plim_3155 2-dehydro-3-deoxyglucarate aldolase; PFAM: HpcH/HpaI aldolase; PRIAM: 4-hydroxy-2-oxovalerate aldolase; SPTR: 2-dehydro-3-deoxyglucarate aldolase; PFAM: HpcH/HpaI aldolase/citrate lyase family; Belongs to the HpcH/HpaI aldolase family.
  
   
 0.455
Isop_3653
HpcH/HpaI aldolase; COGs: COG3836 2 4-dihydroxyhept-2-ene-1 7-dioic acid aldolase; InterPro IPR005000; KEGG: psl:Psta_0796 HpcH/HpaI aldolase; PFAM: HpcH/HpaI aldolase; SPTR: HpcH/HpaI aldolase; PFAM: HpcH/HpaI aldolase/citrate lyase family; Belongs to the HpcH/HpaI aldolase family.
  
   
 0.432
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.