STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0513Penicillinase repressor; InterPro IPR005650; KEGG: hoh:Hoch_4716 transcriptional repressor, CopY family; PFAM: Penicillinase repressor; SPTR: Transcriptional repressor, CopY family protein; PFAM: Penicillinase repressor. (181 aa)    
Predicted Functional Partners:
Isop_0512
CRISPR-associated protein, GSU0054; InterPro IPR019089; KEGG: hoh:Hoch_4849 hypothetical protein; PFAM: CRISPR-associated protein, GSU0054; SPTR: Putative uncharacterized protein; manually curated; PFAM: CRISPR-associated protein, GSU0054 family (Cas_GSU0054).
       0.564
Isop_3151
Peptidase M56 BlaR1; InterPro IPR008756; KEGG: sus:Acid_5553 peptidase M56, BlaR1; PFAM: peptidase M56 BlaR1; SPTR: Peptidase M56, BlaR1.
 
  
 0.563
Isop_3064
ASPIC/UnbV domain protein; InterPro IPR013517: IPR011519; KEGG: rba:RB11088 hypothetical protein; PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; SPTR: Similar to ASPIC; PFAM: ASPIC and UnbV; FG-GAP repeat.
  
     0.539
Isop_1967
ASPIC/UnbV domain protein; InterPro IPR013517: IPR011519; KEGG: sus:Acid_0215 ASPIC/UnbV domain-containing protein; PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; SPTR: ASPIC/UnbV domain protein; PFAM: ASPIC and UnbV; FG-GAP repeat.
  
     0.523
Isop_3356
ASPIC/UnbV domain protein; InterPro IPR019734: IPR013026: IPR011519; KEGG: ote:Oter_2945 TPR repeat-containing protein; PFAM: ASPIC/UnbV domain protein; SPTR: TPR repeat-containing protein; PFAM: ASPIC and UnbV.
  
     0.508
Isop_2777
ASPIC/UnbV domain protein; InterPro IPR013517: IPR011519; KEGG: aba:Acid345_0425 hypothetical protein; PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; SPTR: Putative uncharacterized protein; PFAM: ASPIC and UnbV; FG-GAP repeat.
  
     0.489
Isop_1191
ASPIC/UnbV domain protein; InterPro IPR013517: IPR011519; KEGG: sus:Acid_1964 ASPIC/UnbV domain-containing protein; PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; SPTR: ASPIC/UnbV domain protein; PFAM: ASPIC and UnbV.
  
     0.468
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
       0.428
Isop_0945
FG-GAP repeat protein; InterPro IPR013517; KEGG: plm:Plim_3628 FG-GAP repeat protein; PFAM: FG-GAP repeat protein; SPTR: Lipoprotein, putative.
  
     0.408
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.