STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0569Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: plm:Plim_2489 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain. (386 aa)    
Predicted Functional Partners:
Isop_0570
InterPro IPR012307: IPR017441; KEGG: rba:RB12035 hypothetical protein; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: Putative uncharacterized protein; PFAM: Xylose isomerase-like TIM barrel.
 
    0.854
Isop_0568
Xylose isomerase domain-containing protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: plm:Plim_0391 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: Xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase-like TIM barrel.
 
    0.728
Isop_0571
KEGG: plm:Plim_1608 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.724
Isop_2337
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: psl:Psta_3890 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Probable NADH-dependent dyhydrogenase related protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain.
  
     0.602
Isop_3370
KEGG: rba:RB940 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.480
Isop_3065
Protein of unknown function DUF1501; InterPro IPR006311: IPR017909: IPR019546: IPR010869; KEGG: dfe:Dfer_1039 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
  
     0.475
Isop_2981
Xylose isomerase domain-containing protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307: IPR011418; KEGG: rba:RB5053 hypothetical protein; PFAM: Xylose isomerase domain-containing protein TIM barrel; AP endonuclease 2 domain protein; SPTR: Putative uncharacterized protein; PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel.
  
    0.422
Isop_3066
InterPro IPR011444; KEGG: dfe:Dfer_1040 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1549); Protein of unknown function (DUF1553).
  
     0.416
Isop_2210
KEGG: psl:Psta_0705 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.405
Isop_2652
COGs: COG3828 conserved hypothetical protein; KEGG: sus:Acid_5410 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Trehalose utilisation.
  
     0.403
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.