STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0570InterPro IPR012307: IPR017441; KEGG: rba:RB12035 hypothetical protein; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: Putative uncharacterized protein; PFAM: Xylose isomerase-like TIM barrel. (358 aa)    
Predicted Functional Partners:
Isop_0571
KEGG: plm:Plim_1608 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.878
Isop_0569
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: plm:Plim_2489 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain.
 
    0.854
Isop_2519
KEGG: rbi:RB2501_02765 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Trehalose utilisation.
  
     0.762
Isop_3065
Protein of unknown function DUF1501; InterPro IPR006311: IPR017909: IPR019546: IPR010869; KEGG: dfe:Dfer_1039 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
  
     0.762
Isop_2747
Esterase; KEGG: psl:Psta_2350 esterase; SPTR: Putative uncharacterized protein.
  
     0.760
Isop_0292
Heme-binding protein; InterPro IPR009056: IPR013427; KEGG: plm:Plim_3308 heme-binding protein; SPTR: Putative uncharacterized protein; TIGRFAM: heme-binding protein; PFAM: Cytochrome c; TIGRFAM: putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
     0.758
Isop_3066
InterPro IPR011444; KEGG: dfe:Dfer_1040 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1549); Protein of unknown function (DUF1553).
  
     0.756
Isop_0485
Hypothetical protein; KEGG: sus:Acid_1892 isochorismatase hydrolase; SPTR: Isochorismatase hydrolase; PFAM: Isochorismatase family; Trehalose utilisation.
 
     0.748
Isop_2678
Heme-binding protein; InterPro IPR009056: IPR013427; KEGG: plm:Plim_2734 membrane-bound dehydrogenase domain protein; SPTR: Heme-binding protein; TIGRFAM: heme-binding protein; PFAM: Cytochrome c; TIGRFAM: putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
     0.713
Isop_1267
Membrane-bound dehydrogenase domain protein; InterPro IPR009056: IPR013428: IPR013427: IPR003088; KEGG: rba:RB3322 cytochrome c; PFAM: cytochrome c class I; SPTR: Putative uncharacterized protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Cytochrome c; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
     0.710
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.