STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0633KEGG: sfu:Sfum_1331 hypothetical protein; SPTR: Putative uncharacterized protein. (653 aa)    
Predicted Functional Partners:
Isop_0634
Protein of unknown function DUF362; COGs: COG2006 conserved hypothetical protein; InterPro IPR006311; KEGG: hoh:Hoch_0562 protein of unknown function DUF362; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF362).
       0.508
Isop_0635
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG0348 Polyferredoxin; InterPro IPR017896: IPR017900; KEGG: hoh:Hoch_0561 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain.
       0.488
Isop_0631
Protein of unknown function DUF2203; COGs: COG4911 conserved hypothetical protein; InterPro IPR018699; KEGG: tro:trd_A0913 hypothetical protein; PFAM: Protein of unknown function DUF2203; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2203).
       0.437
Isop_0632
Hypothetical protein; KEGG: vsp:VS_II1081 transcriptional regulators, LysR family; SPTR: Transcriptional regulators, LysR family.
       0.437
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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