STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Isop_0691ATP-binding region ATPase domain protein; InterPro IPR003594; KEGG: azl:AZL_018000 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; SPTR: Putative uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (147 aa)    
Predicted Functional Partners:
Isop_0692
Anti-anti-sigma factor; InterPro IPR002645: IPR003658; KEGG: mbn:Mboo_1159 anti-sigma-factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
 
 
 0.961
Isop_2872
Protein serine phosphatase with GAF(s) sensor(s); COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterProIPR000253: IPR003018: IPR001932: IPR019756: IPR 010822; KEGG: psl:Psta_4013 protein serine phosphatase with GAF(s) sensor(s); PFAM: Stage II sporulation protein E; Forkhead-associated protein; SMART: protein phosphatase 2C domain protein; Forkhead-associated protein; GAF domain protein; SPTR: Protein serine phosphatase with GAF(S) sensor(S); PFAM: GAF domain; Stage II sporulation protein E (SpoIIE); FHA domain.
 
 
 0.912
Isop_0690
COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001789: IPR010822: IPR001932; KEGG: sus:Acid_4295 response regulator receiver modulated serine phosphatase; PFAM: Stage II sporulation protein E; response regulator receiver; SMART: protein phosphatase 2C domain protein; response regulator receiver; SPTR: Response regulator receiver modulated serine phosphatase; PFAM: Response regulator receiver domain; Stage II sporulation protein E (SpoIIE).
 
 
 0.906
Isop_0804
Protein serine phosphatase with GAF(s) sensor(s); COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR000253: IPR003018: IPR010822: IPR001932; KEGG: nhl:Nhal_1223 stage II sporulation E family protein; PFAM: Stage II sporulation protein E; GAF domain protein; Forkhead-associated protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; Forkhead-associated protein; SPTR: Stage II sporulation E family protein; PFAM: GAF domain; Stage II sporulation protein E (SpoIIE); FHA domain.
 
 
 0.906
Isop_0051
Protein serine/threonine phosphatase; COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR010822: IPR001932; KEGG: plm:Plim_3158 stage II sporulation E family protein; PFAM: Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein; SPTR: Stage II sporulation E family protein; PFAM: Stage II sporulation protein E (SpoIIE).
 
 
 0.879
Isop_2637
Anti-sigma-factor antagonist; COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); InterPro IPR002645: IPR003658; KEGG: lhk:LHK_00821 anti-sigma-factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
 
 
 0.874
Isop_0372
Anti-anti-sigma factor; InterPro IPR002645: IPR003658; KEGG: plm:Plim_2057 anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Probable anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor); TIGRFAM: anti-anti-sigma factor; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
 
 
 0.846
Isop_1972
COGs: COG0642 Signal transduction histidine kinase; InterProIPR013655: IPR013767: IPR003661: IPR003594: IPR 001789: IPR008207: IPR000014: IPR004358: IPR000896: IPR005467; KEGG: rba:RB159 sensory transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; Hpt domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: Sensory transduction histidine k [...]
 
  
 0.815
Isop_3271
COGs: COG0642 Signal transduction histidine kinase; InterProIPR004358: IPR000014: IPR001610: IPR003661: IPR 003594: IPR001789: IPR005467: IPR000700: IPR008207: IPR013767; KEGG: psl:Psta_1412 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; response regulator receiver; SPTR: PAS/PAC sensor hybrid h [...]
 
  
 0.813
Isop_1367
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.798
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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