STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0696COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: plm:Plim_4196 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1. (454 aa)    
Predicted Functional Partners:
Isop_0695
COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931; KEGG: plm:Plim_1293 transglutaminase domain protein; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein; SPTR: Transglutaminase domain protein; PFAM: Transglutaminase-like superfamily; Domain of unknown function (DUF3488).
       0.727
Isop_1080
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: mxa:MXAN_1030 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1.
  
     0.680
Isop_0825
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sfu:Sfum_0373 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Probable glycosyltransferase; PFAM: Glycosyl transferases group 1.
  
     0.667
Isop_3124
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: cyc:PCC7424_5786 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1.
  
     0.646
Isop_1226
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: cag:Cagg_2495 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1.
  
     0.644
Isop_1903
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: chu:CHU_0890 A-glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: A-glycosyltransferase, glycosyltransferase family 4 protein; PFAM: Glycosyl transferases group 1.
  
     0.635
Isop_2024
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: mxa:MXAN_1029 glycosyl transferase, group 1 family protein; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase; PFAM: Glycosyl transferases group 1.
  
     0.618
Isop_1227
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sti:Sthe_0904 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1.
  
     0.569
Isop_3198
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: scl:sce1301 glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Glycosyltransferase; PFAM: Glycosyl transferases group 1.
  
     0.552
Isop_3451
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sti:Sthe_1714 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1.
  
     0.536
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.