STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0747COGs: COG1716 FOG: FHA domain; InterPro IPR000253; KEGG: plm:Plim_2211 forkhead-associated protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; SPTR: Forkhead-associated protein; PFAM: FHA domain. (154 aa)    
Predicted Functional Partners:
Isop_2530
COGs: COG1716 FOG: FHA domain; InterPro IPR000253; KEGG: psl:Psta_4736 FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; SPTR: FHA domain containing protein; PFAM: FHA domain.
  
     0.737
Isop_1952
COGs: COG1716 FOG: FHA domain; InterPro IPR000253; KEGG: plm:Plim_4219 forkhead-associated protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; SPTR: Forkhead-associated protein; PFAM: FHA domain.
  
     0.730
Isop_0748
KEGG: cbt:CLH_0103 prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase.
       0.563
Isop_0044
COGs: COG0567 2-oxoglutarate dehydrogenase complex dehydrogenase (E1); InterPro IPR011603: IPR001017: IPR005475; KEGG: sfu:Sfum_3547 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase central region; dehydrogenase E1 component; PRIAM: Oxoglutarate dehydrogenase (succinyl-transferring); SPTR: 2-oxoglutarate dehydrogenase, E1 component; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Dehydrogenase E1 component; Transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component.
    
 
 0.537
Isop_2990
InterPro IPR002917; KEGG: krh:KRH_10290 hypothetical protein; PFAM: GTP-binding protein HSR1-related; SPTR: Putative uncharacterized protein.
  
     0.444
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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