STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0762Gas vesicle K; InterPro IPR007805; KEGG: aba:Acid345_2406 gas vesicle K; PFAM: Gas vesicle K; SPTR: Gas vesicle protein K; PFAM: Gas vesicle protein K. (146 aa)    
Predicted Functional Partners:
Isop_0763
Gas vesicle protein GVPa; InterPro IPR000638; KEGG: pin:Ping_1260 gas vesicle protein GVPa; PFAM: gas vesicle protein GVPa; SPTR: Gas vesicle protein GVPa; PFAM: Gas vesicle protein.
 
   
 0.951
Isop_0760
Gas vesicle protein GVPa; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
   
 0.906
Isop_0766
Gas vesicle synthesis GvpLGvpF; InterPro IPR009430; KEGG: mxa:MXAN_2769 GvpL/GvpF family gas vesicle protein; PFAM: Gas vesicle synthesis GvpLGvpF; SPTR: Putative gas vesicle synthesis GvpLGvpF; PFAM: Gas vesicle synthesis protein GvpL/GvpF.
 
   
 0.889
gvpA
Gas vesicle protein GVPa; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
   
 0.843
Isop_0768
Gas vesicle protein GvpN; COGs: COG0714 MoxR-like ATPase; InterPro IPR011704: IPR013462: IPR003593; KEGG: cya:CYA_0826 gas vesicle protein GvpN; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; SPTR: Gas vesicle protein GvpN; TIGRFAM: gas vesicle protein GvpN; PFAM: AAA domain (dynein-related subfamily); CbbQ/NirQ/NorQ C-terminal; TIGRFAM: gas vesicle protein GvpN.
 
   
 0.836
Isop_1314
Gas vesicle synthesis GvpLGvpF; InterPro IPR009430; KEGG: mxa:MXAN_2772 GvpL/GvpF family gas vesicle protein; PFAM: Gas vesicle synthesis GvpLGvpF; SPTR: Gas vesicle protein, GvpL/GvpF family; PFAM: Gas vesicle synthesis protein GvpL/GvpF.
 
     0.790
Isop_0764
KEGG: lbc:LACBIDRAFT_304787 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Isop_0425
AAA family ATPase, CDC48 subfamily; COGs: COG0464 ATPase of the AAA+ class; InterProIPR003338: IPR004201: IPR003959: IPR003593: IPR 003960: IPR005938; KEGG: mxa:MXAN_2773 AAA family ATPase; PFAM: AAA ATPase central domain protein; AAA ATPase VAT domain protein; cell division protein 48 CDC48 domain 2; PRIAM: Adenosinetriphosphatase; SMART: AAA ATPase; SPTR: ATPase, AAA family; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: ATPase family associated with various cellular activities (AAA); Cell division protein 48 (CDC48), N-terminal domain; Cell division protein 48 (CDC48), domain 2; [...]
 
     0.680
Isop_0765
KEGG: pin:Ping_1259 gas vesicle protein G; SPTR: Gas vesicle protein G; PFAM: Gas vesicle protein G.
     
 0.666
Isop_0761
DnaJ central domain protein; InterPro IPR001305; KEGG: sen:SACE_7208 molecular chaperone; PFAM: DnaJ central domain protein; SPTR: Molecular chaperone.
       0.499
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.