STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0778Hypothetical protein; KEGG: ncr:NCU03263 similar to transmembrane protein; SPTR: Peptidoglycan-binding LysM. (118 aa)    
Predicted Functional Partners:
Isop_0779
KEGG: scl:sce7589 hypothetical protein; SPTR: Conserved hypothetical membrane protein.
       0.441
Isop_0780
Hypothetical protein; InterPro IPR009056; KEGG: caa:Caka_0021 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Cytochrome c.
       0.441
Isop_0781
KEGG: scl:sce7587 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3341).
       0.441
Isop_0782
Quinol:cytochrome c oxidoreductase quinone-binding subunit 1; COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: rmr:Rmar_0223 polysulphide reductase NrfD; PFAM: Polysulphide reductase NrfD; SPTR: Polysulphide reductase NrfD; PFAM: Polysulphide reductase, NrfD.
       0.441
Isop_0783
COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR017896; KEGG: ote:Oter_3934 Fe-S-cluster-containing hydrogenase components 1-like protein; SPTR: Molybdopterin oxidoreductase, iron-sulfur binding subunit.
       0.441
Isop_0784
Quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit; InterPro IPR002322: IPR011031; KEGG: caa:Caka_0017 cytochrome c family protein; SPTR: Cytochrome c family protein; PFAM: Class III cytochrome C family; Cytochrome c552.
       0.441
Isop_0777
COGs: COG2993 Cbb3-type cytochrome oxidase cytochrome c subunit; InterPro IPR003468: IPR009056; KEGG: min:Minf_1953 Cbb3-type cytochrome oxidase, cytochrome c subunit; PFAM: cytochrome C oxidase mono-heme subunit/FixO; SPTR: Cytochrome C oxidase, mono-heme subunit/FixO superfamily; PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II.
       0.437
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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