STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Isop_0797Protein of unknown function DUF2309; COGs: COG3002 conserved hypothetical protein; InterPro IPR018752; KEGG: chl:Chy400_1924 hypothetical protein; PFAM: Protein of unknown function DUF2309; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2309); Belongs to the UPF0753 family. (812 aa)    
Predicted Functional Partners:
Isop_0798
NADH/Ubiquinone/plastoquinone (complex I); COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR003916: IPR018393: IPR001516: IPR001750; KEGG: bra:BRADO2284 putative NADH dehydrogenase (NADH quinone oxidoreductase)(nuoL3-like); PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; SPTR: Putative NADH dehydrogenase (NADH quinone oxidoreductase)(NuoL3-like); PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; NADH-Ubiquinone/plastoquinone [...]
 
 0.984
Isop_3641
Proton-translocating NADH-quinone oxidoreductase, chain L; COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterProIPR001516: IPR001750: IPR003945: IPR003916: IPR 018393; KEGG: plm:Plim_3868 proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; SPTR: Proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone/plastoq [...]
  
 
 0.831
Isop_0796
KEGG: rba:RB1138 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated; PFAM: Sugar-specific transcriptional regulator TrmB.
 
     0.814
Isop_1137
COGs: COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase; InterPro IPR007357: IPR005101; KEGG: rrs:RoseRS_0009 deoxyribodipyrimidine photolyase-related protein; PFAM: deoxyribodipyrimidine photolyase-related protein; DNA photolyase FAD-binding; SPTR: Deoxyribodipyrimidine photolyase-related protein; PFAM: FAD binding domain of DNA photolyase; Deoxyribodipyrimidine photo-lyase-related protein.
  
     0.575
Isop_3295
DNA photolyase FAD-binding protein; COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR018394: IPR002081: IPR005101; KEGG: chl:Chy400_0772 deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; SPTR: Deoxyribodipyrimidine photo-lyase; PFAM: FAD binding domain of DNA photolyase; DNA photolyase.
  
     0.535
Isop_0799
COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017: IPR017896: IPR017900; KEGG: psl:Psta_2647 protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: Putative uncharacterized protein; PFAM: Cysteine-rich domain.
       0.426
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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