STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0861WD40 repeat, subgroup; COGs: COG2319 FOG: WD40 repeat; InterProIPR020472: IPR019781: IPR001680: IPR019782: IPR 017986: IPR019775; KEGG: psl:Psta_3242 WD-40 repeat protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat-containing protein; SPTR: WD-40 repeat protein; PFAM: WD domain, G-beta repeat; Planctomycete cytochrome C. (514 aa)    
Predicted Functional Partners:
Isop_0862
KEGG: psl:Psta_4371 hypothetical protein; SPTR: Probable serine proteinase, subtilase family protein.
 
     0.860
Isop_1541
WD40 repeat, subgroup; COGs: COG2319 FOG: WD40 repeat; InterProIPR019782: IPR017986: IPR019775: IPR001680: IPR 019781; KEGG: rrs:RoseRS_0892 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat-containing protein; SPTR: WD-40 repeat; PFAM: WD domain, G-beta repeat.
  
     0.774
Isop_1543
WD40 repeat, subgroup; InterProIPR019782: IPR017986: IPR018247: IPR001680: IPR 019781; KEGG: rrs:RoseRS_4025 NB-ARC domain-containing protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat-containing protein; SPTR: NB-ARC domain protein; PFAM: WD domain, G-beta repeat.
  
     0.677
Isop_3082
WD40 repeat, subgroup; COGs: COG2319 FOG: WD40 repeat; InterPro IPR001680: IPR019782: IPR017986: IPR019781; KEGG: hoh:Hoch_3099 serine/threonine protein kinase with WD40 repeats; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat-containing protein; SPTR: Serine/threonine protein kinase with WD40 repeats; PFAM: WD domain, G-beta repeat.
  
     0.669
Isop_2985
Ankyrin; COGs: COG0666 FOG: Ankyrin repeat; InterPro IPR002110: IPR020683; KEGG: sin:YN1551_2013 ankyrin; PFAM: Ankyrin; SPTR: Ankyrin; PFAM: Ankyrin repeat.
  
 
 0.652
Isop_2532
InterPro IPR019734: IPR013026: IPR001440; KEGG: cpc:Cpar_1554 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
  
 
  0.637
Isop_2908
COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: cag:Cagg_1601 histone deacetylase superfamily; PFAM: histone deacetylase superfamily; PRIAM: Histone deacetylase; SPTR: Histone deacetylase superfamily; PFAM: Histone deacetylase domain.
    
  0.546
Isop_2585
InterPro IPR007412; KEGG: psl:Psta_4010 anti-sigma-28 factor, FlgM; PFAM: Anti-sigma-28 factor FlgM family protein; SPTR: Anti-sigma-28 factor, FlgM; TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor, FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor FlgM.
  
   0.521
Isop_3524
InterPro IPR003343: IPR011444; KEGG: psl:Psta_2092 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; Ig domain protein group 2 domain protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1549); Protein of unknown function (DUF1553).
  
     0.519
Isop_3551
Protein of unknown function DUF1549; InterPro IPR003343: IPR011444; KEGG: sus:Acid_5709 hypothetical protein; PFAM: protein of unknown function DUF1549; Ig domain protein group 2 domain protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial Ig-like domain (group 2); Protein of unknown function (DUF1549); Protein of unknown function (DUF1553).
  
     0.518
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.