STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0876KEGG: rde:RD1_1585 VBCS repeat-containing protein; SPTR: VCBS repeat domain protein. (1139 aa)    
Predicted Functional Partners:
Isop_0878
Hypothetical protein; InterPro IPR017481; KEGG: nca:Noca_3554 TPR repeat-containing protein; SPTR: TPR repeat; TIGRFAM: conserved hypothetical protein TIGR03032.
 
     0.557
Isop_0990
Ig family protein; InterPro IPR008009; KEGG: rci:RRC213 hypothetical protein; PFAM: Ig family protein; SPTR: Putative uncharacterized protein; PFAM: Putative Ig domain.
  
 
   0.523
Isop_0386
KEGG: kfl:Kfla_1513 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.512
Isop_3063
InterPro IPR011031; KEGG: rba:RB11084 response regulator aspartate phosphatase RapC; SPTR: Putative uncharacterized protein.
  
    0.512
Isop_0879
Tetratricopeptide TPR_1 repeat-containing protein; COGs: COG3914 O-linked N-acetylglucosamine transferase SPINDLY family; InterPro IPR001440: IPR019734: IPR013026; KEGG: ote:Oter_3958 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
 
    0.496
Isop_0877
Hypothetical protein; InterPro IPR013424; KEGG: sml:Smlt1009 putative glycine-rich autotransporter protein; SPTR: Putative glycine-rich autotransporter protein.
       0.471
Isop_2397
COGs: COG0658 membrane metal-binding protein; InterPro IPR004477: IPR000073; KEGG: rba:RB9840 competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; alpha/beta hydrolase fold; SPTR: Probable competence protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: Competence protein; Metallo-beta-lactamase superfamily; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.453
Isop_3624
Hypothetical protein; InterPro IPR000601; KEGG: mar:MAE_61060 hyalin repeat-containing protein; SPTR: Hyalin repeat protein.
  
 
   0.426
Isop_3239
ABC transporter related protein; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR017871: IPR003593: IPR003439: IPR017940; KEGG: psl:Psta_2756 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Probable toxin secretion ABC transporter ATP-binding protein; PFAM: ABC transporter.
 
  
 0.422
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.