STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Isop_0878Hypothetical protein; InterPro IPR017481; KEGG: nca:Noca_3554 TPR repeat-containing protein; SPTR: TPR repeat; TIGRFAM: conserved hypothetical protein TIGR03032. (409 aa)    
Predicted Functional Partners:
Isop_1160
Tetratricopeptide TPR_1 repeat-containing protein; COGs: COG5010 Flp pilus assembly protein TadD contains TPR repeats; InterPro IPR019734: IPR013026: IPR001440; KEGG: azl:AZL_f01560 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
  
   0.903
Isop_0879
Tetratricopeptide TPR_1 repeat-containing protein; COGs: COG3914 O-linked N-acetylglucosamine transferase SPINDLY family; InterPro IPR001440: IPR019734: IPR013026; KEGG: ote:Oter_3958 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
 
   0.808
Isop_0876
KEGG: rde:RD1_1585 VBCS repeat-containing protein; SPTR: VCBS repeat domain protein.
 
     0.557
Isop_0877
Hypothetical protein; InterPro IPR013424; KEGG: sml:Smlt1009 putative glycine-rich autotransporter protein; SPTR: Putative glycine-rich autotransporter protein.
       0.434
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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