STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0896Alpha/beta hydrolase fold protein; InterPro IPR000073: IPR002471; KEGG: mma:MM_3198 hypothetical protein; PFAM: alpha/beta hydrolase fold; SPTR: Putative uncharacterized protein; PFAM: X-Pro dipeptidyl-peptidase (S15 family). (492 aa)    
Predicted Functional Partners:
Isop_2003
KR domain protein; COGs: COG3321 Polyketide synthase modules and related protein; InterProIPR014031: IPR014043: IPR006163: IPR013968: IPR 009081; KEGG: glo:Glov_2267 polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: KR domain protein; Beta-ketoacyl synthase; Acyl transferase; phosphopantetheine-binding; SPTR: Polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: acyl carrier protein.
  
 0.681
Isop_3434
Metallophosphoesterase; InterPro IPR004843; KEGG: psl:Psta_1609 hypothetical protein; PFAM: metallophosphoesterase; SPTR: Putative uncharacterized protein; PFAM: Calcineurin-like phosphoesterase.
    
  0.625
Isop_0897
COGs: COG0515 Serine/threonine protein kinase; InterProIPR017442: IPR020635: IPR002290: IPR000719: IPR 017441: IPR008271; KEGG: tte:TTE1500 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; SPTR: Protein tyrosine kinase family; PFAM: Protein kinase domain.
       0.494
Isop_3282
Peptidase S41; COGs: COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system; InterPro IPR012393: IPR005151: IPR011659; KEGG: hoh:Hoch_5294 peptidase S41; PFAM: peptidase S41; WD40-like beta Propeller containing protein; SMART: peptidase S41; SPTR: Peptidase S41; PFAM: WD40-like Beta Propeller Repeat; Peptidase family S41.
 
     0.443
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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