STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0940Hypothetical protein; KEGG: gvi:gvip179 dihydrobiliverdin:ferredoxin oxidoreductase; SPTR: Ferredoxin-dependent bilin reductase; PFAM: Ferredoxin-dependent bilin reductase. (295 aa)    
Predicted Functional Partners:
Isop_0941
COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670: IPR017972; KEGG: reu:Reut_C6426 iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; SPTR: Iron-containing alcohol dehydrogenase; PFAM: Iron-containing alcohol dehydrogenase.
       0.532
Isop_0942
KEGG: rba:RB3171 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.532
Isop_0939
Small GTP-binding protein; COGs: COG0486 GTPase; InterPro IPR005225: IPR018948: IPR002917; KEGG: tra:Trad_1190 tRNA modification GTPase TrmE; PFAM: GTP-binding protein HSR1-related; GTP-binding protein TrmE-like; SPTR: TRNA modification GTPase TrmE; TIGRFAM: small GTP-binding protein; manually curated; PFAM: GTPase of unknown function; TIGRFAM: small GTP-binding protein domain; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.528
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.