Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Isop_0951Hypothetical protein; COGs: COG3857 ATP-dependent nuclease subunit B; InterPro IPR014017; KEGG: plm:Plim_2361 ATP-dependent nuclease subunit B-like protein; SPTR: ATP-dependent deoxyribonuclease subunit B. (1245 aa)    
Predicted Functional Partners:
Isop_0952
Exodeoxyribonuclease V; COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR014016: IPR014017: IPR000212; KEGG: plm:Plim_1377 exodeoxyribonuclease V; PFAM: UvrD/REP helicase; PRIAM: Exodeoxyribonuclease V; SPTR: UvrD/REP helicase; PFAM: UvrD/REP helicase.
 
 
 0.995
Isop_2439
KEGG: oan:Oant_0214 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.845
uppP
Bacitracin resistance protein BacA; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
       0.782
Isop_2736
KEGG: mxa:MXAN_5625 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.555
Isop_0175
Glycosyl transferase family 39; InterPro IPR003342; KEGG: psl:Psta_0545 hypothetical protein; PFAM: glycosyl transferase family 39; SPTR: Dolichyl-phosphate-mannose-protein mannosyltransferase protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.540
Isop_1412
Hypothetical protein; KEGG: plm:Plim_3397 4-amino-4-deoxy-L-arabinose transferase-like glycosyltransferase of PMT family; SPTR: Putative uncharacterized protein.
  
     0.530
Isop_2254
KEGG: aba:Acid345_4727 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.527
Isop_1956
KEGG: plm:Plim_0336 hypothetical protein; SPTR: Dolichyl-phosphate-mannose-protein mannosyltransferase protein.
  
     0.517
Isop_1965
Hypothetical protein; KEGG: psl:Psta_3038 peptidase-like protein; SPTR: Peptidase-like protein.
  
     0.500
Isop_2737
Hypothetical protein; KEGG: rrs:RoseRS_0824 glycosyltransferase; SPTR: 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.489
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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