STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0955Hypothetical protein; InterPro IPR012902: IPR001120; KEGG: plm:Plim_1302 protein of unknown function DUF1559; SPTR: Probable fimbrial protein; PFAM: Prokaryotic N-terminal methylation motif; Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (375 aa)    
Predicted Functional Partners:
Isop_3426
KEGG: plm:Plim_3751 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.654
Isop_3563
Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR019734: IPR013026: IPR001440; KEGG: plm:Plim_0726 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Putative uncharacterized protein.
  
     0.616
Isop_1036
COGs: COG4972 Tfp pilus assembly protein ATPase PilM; InterPro IPR005883; KEGG: plm:Plim_0076 type IV pilus assembly protein PilM; SPTR: Probable fimbrial assembly protein PilM; TIGRFAM: type IV pilus assembly protein PilM; PFAM: Competence protein A; Cell division protein FtsA; TIGRFAM: type IV pilus assembly protein PilM.
 
     0.607
Isop_0986
KEGG: psl:Psta_0111 organic solvent tolerance protein OstA-like protein; SPTR: Organic solvent tolerance protein OstA-like protein.
  
     0.544
Isop_3427
Hypothetical protein; InterPro IPR022272; KEGG: psl:Psta_2388 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.519
Isop_1591
COGs: COG1538 Outer membrane protein; KEGG: plm:Plim_2805 outer membrane efflux protein; SPTR: Putative uncharacterized protein; PFAM: Outer membrane efflux protein.
  
     0.504
Isop_0202
KEGG: plm:Plim_3249 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.487
Isop_0967
Hypothetical protein; KEGG: rba:RB6127 signal peptide; SPTR: Putative uncharacterized protein.
  
    0.469
Isop_2881
InterPro IPR019734: IPR013026: IPR001440; KEGG: plm:Plim_0675 tetratricopeptide domain protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide TPR_4.
  
     0.469
Isop_2329
KEGG: psl:Psta_4730 hypothetical protein; SPTR: Outer membrane protein-like protein.
  
     0.463
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.