STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0992Conserved repeat domain protein; InterPro IPR001434: IPR008454; KEGG: rca:Rcas_2197 hypothetical protein; PFAM: protein of unknown function DUF11; Cna B domain protein; SPTR: Conserved repeat domain; TIGRFAM: conserved repeat domain protein; TIGRFAM: conserved repeat domain. (3875 aa)    
Predicted Functional Partners:
Isop_1073
Peptidase S8 and S53 subtilisin kexin sedolisin; COGs: COG4935 Regulatory P domain of the subtilisin-like proprotein convertase and other protease; InterPro IPR000209: IPR002884; KEGG: mar:MAE_12430 hypothetical protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; SPTR: Putative uncharacterized protein; PFAM: Proprotein convertase P-domain; Subtilase family.
 
 0.962
Isop_0706
Protein of unknown function DUF1565; InterPro IPR011506: IPR000209: IPR011459: IPR006626; KEGG: mar:MAE_50880 hypothetical protein; PFAM: protein of unknown function DUF1565; Planctomycete extracellular domain protein; peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Peptidase families S8 and S53 domain protein; PFAM: Protein of unknown function (DUF1565); Subtilase family.
     
  0.900
Isop_2474
InterPro IPR013249: IPR014284; KEGG: psl:Psta_3331 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
 
   0.610
Isop_1870
KEGG: psl:Psta_4021 ABC-2 type transporter; SPTR: ABC-2 type transporter; PFAM: ABC-2 type transporter.
  
     0.527
Isop_0937
KEGG: rba:RB4703 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
   0.506
Isop_0991
COGs: COG0515 Serine/threonine protein kinase; InterProIPR020635: IPR002290: IPR019734: IPR000719: IPR 013026: IPR017442: IPR001440: IPR017441: IPR008271; KEGG: plm:Plim_4000 serine/threonine protein kinase-related protein; PFAM: Serine/threonine-protein kinase-like domain; Tetratricopeptide TPR_1 repeat-containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; Tetratricopeptide repeat; SPTR: Probable serine/threonine protein kinase; PFAM: Protein kinase domain; Tetratricopeptide repeat.
  
   0.482
Isop_0788
Abortive infection protein; InterPro IPR003675; KEGG: rba:RB10877 hypothetical protein; PFAM: Abortive infection protein; SPTR: Putative uncharacterized protein; PFAM: CAAX amino terminal protease family.
  
     0.479
Isop_0990
Ig family protein; InterPro IPR008009; KEGG: rci:RRC213 hypothetical protein; PFAM: Ig family protein; SPTR: Putative uncharacterized protein; PFAM: Putative Ig domain.
       0.466
Isop_3467
Hypothetical protein; KEGG: rba:RB6221 signal peptide; SPTR: Putative uncharacterized protein.
  
     0.462
Isop_1475
Hypothetical protein; COGs: COG0438 Glycosyltransferase; KEGG: ami:Amir_3661 glycosyl transferase group 1; SPTR: Putative uncharacterized protein.
  
     0.459
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.