STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_1004Hypothetical protein; InterPro IPR001588; KEGG: aba:Acid345_3138 hypothetical protein; SPTR: Putative uncharacterized protein. (201 aa)    
Predicted Functional Partners:
Isop_1003
Transcriptional regulator, ArsR family; KEGG: bbt:BBta_7857 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory protein, arsR family.
 
     0.933
Isop_1249
KEGG: ddr:Deide_06010 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2721).
  
     0.640
Isop_0378
KEGG: reu:Reut_A1745 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.632
Isop_3257
KEGG: smd:Smed_1270 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.612
Isop_1002
Hypothetical protein; InterPro IPR007087; KEGG: rba:RB12890 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.610
Isop_2763
Hypothetical protein; KEGG: sus:Acid_1421 glycosyl transferase family protein; SPTR: Tetratricopeptide repeat protein.
  
     0.606
Isop_3032
KEGG: npu:Npun_R2871 hypothetical protein; SPTR: Phosphoribosylaminoimidazole synthetase.
  
     0.606
Isop_1420
InterPro IPR006148; KEGG: plm:Plim_2730 glucosamine/galactosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; SPTR: Glucosamine-6-phosphate isomerase, putative; PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase.
  
     0.604
Isop_1485
Heme-binding protein; COGs: COG1413 FOG: HEAT repeat; InterPro IPR009056: IPR013427: IPR004155; KEGG: psl:Psta_1217 heme-binding protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: heme-binding protein; PFAM: Cytochrome c; PBS lyase HEAT-like repeat; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
     0.601
Isop_1943
Tyrosine phosphatase; InterPro IPR004861: IPR016130: IPR000387; KEGG: gme:Gmet_0085 protein tyrosine/serine phosphatase; PFAM: tyrosine phosphatase; SPTR: Protein tyrosine/serine phosphatase; PFAM: Tyrosine phosphatase family.
  
     0.595
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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