STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Isop_1007KEGG: tet:TTHERM_00218470 hypothetical protein; SPTR: Exodeoxyribonuclease V, gamma subunit. (354 aa)    
Predicted Functional Partners:
Isop_1008
KEGG: nfi:NFIA_056950 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Isop_1009
Hypothetical protein; KEGG: rpc:RPC_1740 RNA polymerase sigma factor; SPTR: Sigma-24 (FecI-like); TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
       0.773
Isop_1006
Hypothetical protein; KEGG: tit:Thit_0694 CRISPR-associated protein, TIGR02710 family; SPTR: CRISPR-associated protein, TIGR02710 family.
       0.689
Isop_1005
Protein of unknown function DUF1464; COGs: COG2441 butyrate kinase; InterPro IPR009927; KEGG: pfu:PF1187 hypothetical protein; PFAM: protein of unknown function DUF1464; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1464).
       0.539
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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