STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Isop_1069KEGG: fra:Francci3_2916 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2029). (533 aa)    
Predicted Functional Partners:
Isop_1068
Hypothetical protein.
       0.773
Isop_3032
KEGG: npu:Npun_R2871 hypothetical protein; SPTR: Phosphoribosylaminoimidazole synthetase.
  
     0.742
Isop_1406
KEGG: rca:Rcas_4172 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.700
Isop_0359
KEGG: plm:Plim_0766 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.642
Isop_0648
Hypothetical protein; InterPro IPR001789; KEGG: rxy:Rxyl_2770 response regulator receiver protein; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain.
  
     0.622
Isop_3119
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: sti:Sthe_0853 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: Methyltransferase domain.
  
     0.621
Isop_2763
Hypothetical protein; KEGG: sus:Acid_1421 glycosyl transferase family protein; SPTR: Tetratricopeptide repeat protein.
  
    0.616
Isop_3657
KEGG: cag:Cagg_0822 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.585
Isop_3514
Hypothetical protein; KEGG: sus:Acid_1421 glycosyl transferase family protein; SPTR: Glycosyl transferase, family 39.
  
     0.578
Isop_0204
KEGG: mac:MA3428 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.547
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.