STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_1071rRNA methylase; InterPro IPR010719; KEGG: rmr:Rmar_1203 putative rRNA methylase; PFAM: rRNA methylase; SPTR: Putative rRNA methylase; PFAM: Putative rRNA methylase. (212 aa)    
Predicted Functional Partners:
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
 
 0.681
Isop_1407
COGs: COG0430 RNA 3'-terminal phosphate cyclase; InterPro IPR000228; KEGG: tgr:Tgr7_1692 RNA 3'-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase; PRIAM: RNA-3'-phosphate cyclase; SPTR: RNA 3'-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase; TIGRFAM: RNA 3'-phosphate cyclase.
   
    0.675
Isop_1168
Methyltransferase FkbM family; InterPro IPR006342; KEGG: rru:Rru_A3719 methyltransferase FkbM; SPTR: Genome sequencing data, contig C315; TIGRFAM: methyltransferase FkbM family; TIGRFAM: methyltransferase, FkbM family.
   
  
 0.659
Isop_1072
VanZ family protein; COGs: COG4767 Glycopeptide antibiotics resistance protein; InterPro IPR006976; KEGG: cac:CA_C0829 hypothetical protein; PFAM: VanZ family protein; SPTR: VanZ family protein; PFAM: VanZ like family.
       0.651
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
   
  
 0.468
cysS
COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR015803: IPR015273: IPR002308; KEGG: psl:Psta_3589 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; PRIAM: Cysteine--tRNA ligase; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.459
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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