Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Isop_1112Protein of unknown function DUF101; COGs: COG1371 conserved hypothetical protein; InterPro IPR002804; KEGG: rmr:Rmar_0655 protein of unknown function DUF101; PFAM: protein of unknown function DUF101; SPTR: Putative uncharacterized protein; PFAM: Archease protein family (DUF101/UPF0211). (140 aa)    
Predicted Functional Partners:
rtcB
Protein of unknown function UPF0027; COGs: COG1690 conserved hypothetical protein; InterPro IPR001233; KEGG: pca:Pcar_0019 hypothetical protein; PFAM: protein of unknown function UPF0027; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein family UPF0027; Belongs to the RtcB family.
 
 0.974
Isop_3218
KEGG: paa:Paes_0150 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.639
Isop_1407
COGs: COG0430 RNA 3'-terminal phosphate cyclase; InterPro IPR000228; KEGG: tgr:Tgr7_1692 RNA 3'-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase; PRIAM: RNA-3'-phosphate cyclase; SPTR: RNA 3'-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase; TIGRFAM: RNA 3'-phosphate cyclase.
 
 
 
 0.490
Isop_2799
Protein of unknown function DUF52; COGs: COG1355 dioxygenase; InterPro IPR002737; KEGG: rca:Rcas_3629 hypothetical protein; PFAM: protein of unknown function DUF52; SPTR: Putative uncharacterized protein; PFAM: Memo-like protein.
  
     0.490
Isop_1111
Tyrosine phosphatase; InterPro IPR000387: IPR004861; KEGG: geo:Geob_0068 protein tyrosine/serine phosphatase; PFAM: tyrosine phosphatase; SPTR: Protein tyrosine/serine phosphatase; PFAM: Tyrosine phosphatase family.
 
     0.483
Isop_1113
Hypothetical protein; KEGG: fal:FRAAL3740 epoxide hydrolase; SPTR: Whole genome shotgun sequence assembly, scaffold_116.
       0.469
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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