STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_1178COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: rba:RB183 putative outer membrane protein; PFAM: outer membrane efflux protein; SPTR: Putative uncharacterized protein; PFAM: Outer membrane efflux protein. (824 aa)    
Predicted Functional Partners:
Isop_1179
Hypothetical protein.
       0.773
Isop_2987
KEGG: psl:Psta_3111 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.760
Isop_1364
Xylose isomerase domain-containing protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: rba:RB12167 hypothetical protein; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: Putative uncharacterized protein.
  
     0.758
Isop_3658
InterPro IPR001434; KEGG: psl:Psta_4233 conserved repeat domain protein; SPTR: Putative uncharacterized protein; TIGRFAM: conserved repeat domain protein; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain.
  
     0.742
Isop_1649
InterPro IPR007922; KEGG: psl:Psta_1043 protein of unknown function DUF721; PFAM: protein of unknown function DUF721; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF721).
  
     0.731
Isop_0716
KEGG: rba:RB8980 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1559).
  
     0.720
Isop_0202
KEGG: plm:Plim_3249 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.717
Isop_1664
Hypothetical protein; KEGG: pna:Pnap_4853 signal peptide prediction; SPTR: Putative uncharacterized protein.
  
     0.714
Isop_0287
Amidohydrolase 2; COGs: COG1904 Glucuronate isomerase; KEGG: plm:Plim_2160 amidohydrolase 2; SPTR: Putative uncharacterized protein; PFAM: Glucuronate isomerase.
  
     0.705
Isop_3723
Efflux transporter, RND family, MFP subunit; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: amr:AM1_A0123 RND family efflux transporter MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: Putative uncharacterized protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit.
  
  0.704
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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