STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_1195KEGG: psl:Psta_1651 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Dienelactone hydrolase family. (394 aa)    
Predicted Functional Partners:
Isop_1668
KEGG: psl:Psta_1715 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Neutral/alkaline non-lysosomal ceramidase.
  
     0.722
Isop_1803
Acetyl xylan esterase; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR008391; KEGG: rba:RB5616 hypothetical protein; PFAM: Acetyl xylan esterase; SPTR: Putative uncharacterized protein; PFAM: Prolyl oligopeptidase family.
 
     0.713
Isop_3216
InterPro IPR010496; KEGG: psl:Psta_1370 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: Putative secreted glycosyl hydrolase; PFAM: Domain of Unknown Function (DUF1080).
  
     0.704
Isop_0278
Acetyl xylan esterase; InterPro IPR000834: IPR008391; KEGG: psl:Psta_2878 hypothetical protein; PFAM: Acetyl xylan esterase; SPTR: Putative uncharacterized protein; PFAM: Acetyl xylan esterase (AXE1).
 
     0.703
Isop_3317
KEGG: rba:RB12544 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Neutral/alkaline non-lysosomal ceramidase.
  
     0.688
Isop_2920
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: phe:Phep_1694 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
  
     0.685
Isop_2339
Hypothetical protein; KEGG: rba:RB3324 signal peptide; SPTR: Putative uncharacterized protein.
 
     0.662
Isop_2134
KEGG: cma:Cmaq_1622 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.653
Isop_0917
PA14 domain protein; InterPro IPR011658: IPR009056: IPR011031: IPR017937; KEGG: psl:Psta_3883 PA14 domain protein; SMART: PA14 domain protein; SPTR: PA14 domain protein; PFAM: PA14 domain.
 
     0.649
Isop_2725
KEGG: ote:Oter_0116 putative acetyl xylan esterase; SPTR: Probable acetyl xylan esterase.
 
     0.618
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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