Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Isop_1196COGs: COG3008 Paraquat-inducible protein B; InterPro IPR007498: IPR003399; KEGG: abo:ABO_2405 PqiB family protein; PFAM: Paraquat-inducible protein A; Mammalian cell entry related domain protein; SPTR: Mce related protein; PFAM: mce related protein; Paraquat-inducible protein A; TIGRFAM: integral membrane protein, PqiA family. (892 aa)    
Predicted Functional Partners:
Isop_1354
COGs: COG0321 Lipoate-protein ligase B; InterPro IPR004143; KEGG: plm:Plim_3383 lipoate-protein ligase B-like protein; PFAM: biotin/lipoate A/B protein ligase; SPTR: Lipoate-protein ligase B; TIGRFAM: lipoate-protein ligase B.
   
    0.616
Isop_1195
KEGG: psl:Psta_1651 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Dienelactone hydrolase family.
       0.517
Isop_1751
ABC transporter related protein; COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003439: IPR017871: IPR003593; KEGG: psl:Psta_2135 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter.
     
 0.507
Isop_1016
Protein of unknown function DUF140; COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: sit:TM1040_1780 hypothetical protein; PFAM: protein of unknown function DUF140; SPTR: Membrane protein; PFAM: Domain of unknown function DUF140.
 
   
 0.505
Isop_0015
Hypothetical protein; KEGG: mno:Mnod_6296 glycosyl transferase family 2; SPTR: Glycosyl transferase family 2.
  
     0.443
Isop_2889
Protein of unknown function DUF480; COGs: COG3132 conserved hypothetical protein; InterPro IPR007432; KEGG: psl:Psta_3246 hypothetical protein; PFAM: protein of unknown function DUF480; SPTR: Putative uncharacterized protein; manually curated; PFAM: Protein of unknown function, DUF480; Belongs to the UPF0502 family.
 
     0.442
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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