STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_1272InterPro IPR002018: IPR004155; KEGG: plm:Plim_3568 hypothetical protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; Carboxylesterase type B; SPTR: Putative uncharacterized protein; PFAM: PBS lyase HEAT-like repeat. (473 aa)    
Predicted Functional Partners:
Isop_1273
Hypothetical protein; COGs: COG4112 phosphoesterase (MutT family); KEGG: psl:Psta_3526 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: NUDIX domain.
       0.524
Isop_1271
Phage SPO1 DNA polymerase-related protein; COGs: COG1573 Uracil-DNA glycosylase; InterPro IPR005273: IPR005122; KEGG: aca:ACP_0612 uracil-DNA glycosylase, family 4; PFAM: Uracil-DNA glycosylase superfamily; SPTR: Uracil-DNA glycosylase, family 4; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4.
       0.513
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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