STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_1273Hypothetical protein; COGs: COG4112 phosphoesterase (MutT family); KEGG: psl:Psta_3526 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: NUDIX domain. (230 aa)    
Predicted Functional Partners:
Isop_3525
Peptidase domain protein; InterPro IPR007280; KEGG: psl:Psta_2091 peptidase domain protein; PFAM: peptidase domain protein; SPTR: Peptidase domain protein; PFAM: Bacterial Ig-like domain (DUF1927).
  
     0.733
Isop_2195
Prenyltransferase/squalene oxidase; InterPro IPR001917: IPR001330; KEGG: plm:Plim_4048 cycloartenol synthase-like protein; PFAM: Prenyltransferase/squalene oxidase; SPTR: Putative uncharacterized protein.
  
     0.659
Isop_0308
Cupin 2 conserved barrel domain protein; InterPro IPR013096; KEGG: mka:MK0873 mannose-6-phosphate isomerase; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Cupin 2 conserved barrel domain protein; PFAM: Cupin domain.
  
     0.649
Isop_2914
Hypothetical protein; InterPro IPR017909; KEGG: psl:Psta_3531 peptidase domain protein; SPTR: Putative uncharacterized protein.
  
     0.634
Isop_2287
Hypothetical protein; InterPro IPR006311; KEGG: rba:RB2096 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3500); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
  
     0.628
Isop_3538
Prenyltransferase/squalene oxidase; InterPro IPR001330; KEGG: psl:Psta_2910 hypothetical protein; PFAM: Prenyltransferase/squalene oxidase; SPTR: Putative uncharacterized protein.
  
     0.627
Isop_1648
KEGG: psl:Psta_2467 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.625
Isop_0042
Protein of unknown function DUF1549; COGs: COG2319 FOG: WD40 repeat; InterProIPR019782: IPR017986: IPR009056: IPR019781: IPR 003343: IPR011444: IPR001680; KEGG: plm:Plim_1151 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; WD40 repeat, subgroup; Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; WD-40 repeat-containing protein; SPTR: Putative uncharacterized protein; PFAM: WD domain, G-beta repeat; Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553).
  
     0.593
Isop_3524
InterPro IPR003343: IPR011444; KEGG: psl:Psta_2092 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; Ig domain protein group 2 domain protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1549); Protein of unknown function (DUF1553).
  
     0.584
Isop_3407
InterPro IPR011447; KEGG: psl:Psta_2274 protein of unknown function DUF1552; PFAM: protein of unknown function DUF1552; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1552).
  
     0.571
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.