STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_1328KEGG: ttr:Tter_1099 hypothetical protein; SPTR: Putative uncharacterized protein. (532 aa)    
Predicted Functional Partners:
Isop_1697
KEGG: sus:Acid_0265 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.671
Isop_0957
KEGG: sus:Acid_6147 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF362).
  
     0.587
Isop_2527
KEGG: hoh:Hoch_6408 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SpoIVB peptidase S55.
  
     0.562
Isop_1772
KEGG: hoh:Hoch_4942 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.538
Isop_1329
COGs: COG1045 Serine acetyltransferase; InterPro IPR001451; KEGG: psl:Psta_4420 serine O-acetyltransferase; PRIAM: Serine O-acetyltransferase; SPTR: Serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase.
 
     0.515
Isop_1327
Hypothetical protein; KEGG: tgu:100220437 collagen type III alpha 1; SPTR: Whole genome shotgun sequence assembly, scaffold_15, strain Mel28.
       0.471
Isop_3404
Hypothetical protein; InterPro IPR018247; KEGG: hwa:HQ1193A cell surface glycoprotein; SPTR: Probable cell surface glycoprotein; PFAM: Subtilase family.
  
     0.455
Isop_0175
Glycosyl transferase family 39; InterPro IPR003342; KEGG: psl:Psta_0545 hypothetical protein; PFAM: glycosyl transferase family 39; SPTR: Dolichyl-phosphate-mannose-protein mannosyltransferase protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.413
Isop_0635
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG0348 Polyferredoxin; InterPro IPR017896: IPR017900; KEGG: hoh:Hoch_0561 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain.
 
     0.402
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.