STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Isop_1346ABC transporter related protein; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003439: IPR003593; KEGG: bmr:BMI_II322 spermidine/putrescine ABC transporter, ATP-binding protein, putative; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; Belongs to the ABC transporter superfamily. (464 aa)    
Predicted Functional Partners:
Isop_1347
Hypothetical protein; COGs: COG1178 ABC-type Fe3+ transport system permease component; KEGG: ttj:TTHA0716 molybdenum ABC transporter, permease protein; SPTR: Binding-protein-dependent transport systems inner membrane component.
  
 
 0.931
Isop_3448
Hypothetical protein; COGs: COG1178 ABC-type Fe3+ transport system permease component; InterPro IPR000515; KEGG: psl:Psta_3967 binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 
 0.816
Isop_1345
KEGG: cag:Cagg_3648 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.780
Isop_1344
Hypothetical protein; COGs: COG2409 drug exporter of the RND superfamily; InterPro IPR000731; KEGG: nca:Noca_2163 MmpL domain-containing protein; SPTR: MMPL domain protein; PFAM: MMPL family.
       0.773
Isop_1502
Sulfate ABC transporter, inner membrane subunit; COGs: COG0555 ABC-type sulfate transport system permease component; InterPro IPR000515: IPR005667; KEGG: hau:Haur_0258 sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Sulfate ABC transporter, inner membrane subunit; TIGRFAM: sulfate ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: sulfate ABC transporter, permease protein CysW; sulfate ABC transporter, permease protein; sulfate ABC [...]
   
 0.684
Isop_1501
Sulfate ABC transporter, inner membrane subunit; COGs: COG4208 ABC-type sulfate transport system permease component; InterPro IPR000515: IPR005667; KEGG: cya:CYA_0468 sulfate ABC transporter, permease protein CysW; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Sulfate ABC transporter, permease protein CysW; TIGRFAM: sulfate ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: sulfate ABC transporter, permease protein CysW; sulfate ABC transporter, permease protein.
 
     0.606
Isop_2397
COGs: COG0658 membrane metal-binding protein; InterPro IPR004477: IPR000073; KEGG: rba:RB9840 competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; alpha/beta hydrolase fold; SPTR: Probable competence protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: Competence protein; Metallo-beta-lactamase superfamily; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2.
     
 0.555
Isop_1679
ABC transporter related protein; COGs: COG1117 ABC-type phosphate transport system ATPase component; InterProIPR000387: IPR003439: IPR017871: IPR016130: IPR 003593: IPR003595: IPR000340; KEGG: dac:Daci_1595 ABC transporter related; PFAM: ABC transporter related; Dual specificity protein phosphatase; SMART: AAA ATPase; Protein-tyrosine phosphatase, catalytic; SPTR: ABC transporter related; PFAM: ABC transporter; Dual specificity phosphatase, catalytic domain.
  
   
 0.542
Isop_1742
Polar amino acid ABC transporter, inner membrane subunit; COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR000515: IPR001638: IPR010065; KEGG: tai:Taci_0574 polar amino acid ABC transporter, inner membrane subunit; PFAM: extracellular solute-binding protein family 3; binding-protein-dependent transport systems inner membrane component; SMART: extracellular solute-binding protein family 3; SPTR: Polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent tra [...]
 
  
 0.521
Isop_3442
Extracellular solute-binding protein family 1; COGs: COG1840 ABC-type Fe3+ transport system periplasmic component; InterPro IPR006059; KEGG: rba:RB531 iron (III) transport system (iron (III)-binding protein); PFAM: extracellular solute-binding protein family 1; SPTR: Iron (III) transport system (Iron (III)-binding protein); PFAM: Bacterial extracellular solute-binding protein.
 
  
 0.477
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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