Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Isop_1475Hypothetical protein; COGs: COG0438 Glycosyltransferase; KEGG: ami:Amir_3661 glycosyl transferase group 1; SPTR: Putative uncharacterized protein. (413 aa)    
Predicted Functional Partners:
Isop_0258
Cna B domain protein; InterPro IPR008454; KEGG: rca:Rcas_2197 hypothetical protein; PFAM: Cna B domain protein; SPTR: Conserved repeat domain; PFAM: Cna protein B-type domain.
  
     0.470
Isop_1796
Cna B domain protein; InterPro IPR008454; KEGG: ami:Amir_2421 conserved repeat domain protein; PFAM: Cna B domain protein; SPTR: Conserved repeat domain protein; PFAM: Cna protein B-type domain.
  
     0.466
Isop_0992
Conserved repeat domain protein; InterPro IPR001434: IPR008454; KEGG: rca:Rcas_2197 hypothetical protein; PFAM: protein of unknown function DUF11; Cna B domain protein; SPTR: Conserved repeat domain; TIGRFAM: conserved repeat domain protein; TIGRFAM: conserved repeat domain.
  
     0.459
Isop_3042
Eight transmembrane protein EpsH; InterPro IPR013426: IPR019127; KEGG: dvl:Dvul_3054 eight transmembrane protein EpsH; PFAM: Exosortase EpsH-related; SPTR: Eight transmembrane protein EpsH; TIGRFAM: eight transmembrane protein EpsH; PFAM: Transmembrane exosortase (Exosortase_EpsH); TIGRFAM: eight transmembrane protein EpsH (proposed exosortase).
  
     0.455
Isop_2294
Modification methylase NspV; InterPro IPR002052: IPR002296; KEGG: rca:Rcas_1074 modification methylase NspV; SPTR: Modification methylase NspV.
  
     0.426
Isop_2563
COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: bmj:BMULJ_03600 putative glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase, family 2; PFAM: Glycosyl transferase family 2.
  
    0.413
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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