STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_1496Domain of unknown function DUF1745; COGs: COG4398 conserved hypothetical protein; InterPro IPR013702: IPR019494: IPR016741; KEGG: psl:Psta_0358 domain of unknown function DUF1745; PFAM: domain of unknown function DUF1745; FIST C domain; SPTR: Putative uncharacterized protein; PFAM: FIST C domain; FIST N domain. (401 aa)    
Predicted Functional Partners:
Isop_0158
KEGG: sro:Sros_1356 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: CDP-alcohol phosphatidyltransferase.
  
     0.547
Isop_0361
KEGG: nda:Ndas_3773 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104).
  
     0.540
Isop_0657
COGs: COG1960 Acyl-CoA dehydrogenase; KEGG: psl:Psta_0990 putative isovaleryl-CoA dehydrogenase protein; SPTR: Putative isovaleryl-CoA dehydrogenase protein.
  
     0.431
Isop_2781
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR000792: IPR013249: IPR014284; KEGG: rba:RB138 hypothetical protein; PFAM: Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; SPTR: Putative uncharacterized protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
     0.426
Isop_1324
Hypothetical protein; InterPro IPR002052: IPR002296; KEGG: cyn:Cyan7425_5355 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Putative RNA methylase family UPF0020.
  
     0.421
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.