STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_1598Hypothetical protein; KEGG: sli:Slin_2345 oxidoreductase molybdopterin binding protein; SPTR: Oxidoreductase molybdopterin binding protein; PFAM: Oxidoreductase molybdopterin binding domain. (194 aa)    
Predicted Functional Partners:
Isop_1348
Heme-binding protein; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterProIPR021133: IPR009056: IPR013427: IPR004155: IPR 014795; KEGG: plm:Plim_1957 heme-binding protein; PFAM: protein of unknown function DUF1778; PBS lyase HEAT domain protein repeat-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: heme-binding protein; PFAM: Cytochrome c; HEAT repeat; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
 
 
 
 0.741
Isop_2259
KEGG: psl:Psta_2862 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: Copper type II ascorbate-dependent monooxygenase, C-terminal domain.
 
 
 
 0.632
Isop_0917
PA14 domain protein; InterPro IPR011658: IPR009056: IPR011031: IPR017937; KEGG: psl:Psta_3883 PA14 domain protein; SMART: PA14 domain protein; SPTR: PA14 domain protein; PFAM: PA14 domain.
   
 
 0.630
Isop_0795
ATP-binding region ATPase domain protein; InterPro IPR003594: IPR016160; KEGG: sus:Acid_7798 response regulator receiver protein; PFAM: ATP-binding region ATPase domain protein; SPTR: Response regulator receiver protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
     0.625
Isop_0784
Quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit; InterPro IPR002322: IPR011031; KEGG: caa:Caka_0017 cytochrome c family protein; SPTR: Cytochrome c family protein; PFAM: Class III cytochrome C family; Cytochrome c552.
  
 
 0.597
Isop_1912
Membrane-bound dehydrogenase domain protein; InterPro IPR003088: IPR013428: IPR013427: IPR009056; KEGG: plm:Plim_0902 heme-binding protein; PFAM: cytochrome c class I; SPTR: Heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Cytochrome c; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
 
 0.597
Isop_2930
KEGG: rsp:RSP_3995 hypothetical protein; SPTR: Cytochrome c family protein, putative; PFAM: Protein of unknown function (DUF3365).
   
 
 0.584
Isop_1599
Hypothetical protein; InterPro IPR001120: IPR012902; KEGG: plm:Plim_4074 protein of unknown function DUF1559; SPTR: Putative uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
       0.581
Isop_3356
ASPIC/UnbV domain protein; InterPro IPR019734: IPR013026: IPR011519; KEGG: ote:Oter_2945 TPR repeat-containing protein; PFAM: ASPIC/UnbV domain protein; SPTR: TPR repeat-containing protein; PFAM: ASPIC and UnbV.
  
     0.525
Isop_3281
InterPro IPR012577; KEGG: psl:Psta_4030 NIPSNAP family containing protein; PFAM: NIPSNAP family containing protein; SPTR: NIPSNAP family containing protein; PFAM: NIPSNAP.
  
     0.513
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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