STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_1608Carbohydrate binding family 6; InterProIPR003961: IPR005084: IPR018247: IPR006626: IPR 006584: IPR011459; KEGG: sco:SCO7170 secreted sugar hydrolase; PFAM: Carbohydrate binding family 6; protein of unknown function DUF1565; Fibronectin type III domain protein; SMART: cellulose binding type IV; Parallel beta-helix repeat; Fibronectin type III domain protein; SPTR: Carbohydrate binding family 6; PFAM: Carbohydrate binding module (family 6); Fibronectin type III domain. (1142 aa)    
Predicted Functional Partners:
Isop_1073
Peptidase S8 and S53 subtilisin kexin sedolisin; COGs: COG4935 Regulatory P domain of the subtilisin-like proprotein convertase and other protease; InterPro IPR000209: IPR002884; KEGG: mar:MAE_12430 hypothetical protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; SPTR: Putative uncharacterized protein; PFAM: Proprotein convertase P-domain; Subtilase family.
 
 
 0.642
Isop_2459
Hypothetical protein; InterPro IPR006626; KEGG: rlg:Rleg_1748 hemolysin-type calcium-binding region; SPTR: Hemolysin-type calcium-binding region; PFAM: Protein of unknown function (DUF1565).
  
     0.607
Isop_1609
KEGG: fal:FRAAL6628 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.465
Isop_0323
Glycoside hydrolase family 5; COGs: COG2730 Endoglucanase; InterPro IPR001547: IPR018087; KEGG: trq:TRQ2_1074 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 5; SPTR: Glycoside hydrolase family 5; PFAM: Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.425
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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