Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Isop_1800KEGG: psl:Psta_3976 hypothetical protein; SPTR: Putative uncharacterized protein. (1166 aa)    
Predicted Functional Partners:
Isop_1799
KEGG: psl:Psta_3977 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.808
Isop_3563
Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR019734: IPR013026: IPR001440; KEGG: plm:Plim_0726 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Putative uncharacterized protein.
  
   
 0.795
Isop_3075
Forkhead-associated protein; InterPro IPR000253; KEGG: psl:Psta_2714 pyrrolo-quinoline quinone; PFAM: Forkhead-associated protein; SPTR: Putative uncharacterized protein.
  
   
 0.782
Isop_3545
Pyrrolo-quinoline quinone repeat-containing protein; InterPro IPR002372: IPR019734: IPR018391; KEGG: psl:Psta_2917 hypothetical protein; PFAM: Pyrrolo-quinoline quinone repeat-containing protein; SPTR: Putative uncharacterized protein.
  
   
 0.782
Isop_3426
KEGG: plm:Plim_3751 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.775
Isop_0715
KEGG: rba:RB8980 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1559).
  
     0.774
Isop_0716
KEGG: rba:RB8980 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1559).
  
     0.774
Isop_0735
Prenyltransferase/squalene oxidase; InterPro IPR001330: IPR004155; KEGG: psl:Psta_2719 hypothetical protein; PFAM: Prenyltransferase/squalene oxidase; SMART: PBS lyase HEAT domain protein repeat-containing protein; SPTR: Putative uncharacterized protein.
  
     0.774
Isop_0966
Hypothetical protein; KEGG: rba:RB6127 signal peptide; SPTR: Putative uncharacterized protein.
  
     0.774
Isop_0986
KEGG: psl:Psta_0111 organic solvent tolerance protein OstA-like protein; SPTR: Organic solvent tolerance protein OstA-like protein.
  
     0.774
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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